STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoVFADipicolinate synthase subunit A. (299 aa)    
Predicted Functional Partners:
spoVFB
Dipicolinate synthase subunit B; Together with DpaA, catalyzes the conversion of dihydrodipicolinate to dipicolinate (DPA).
 
 
 0.999
ytaF
Conserved membrane protein YtaF; Probably functions as a manganese efflux pump.
  
     0.721
BL02035
Hypothetical protein.
  
     0.701
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
    
  0.695
yqfD
Putative stage IV sporulation YqfD.
  
     0.647
ywlD
YwlD; Probably functions as a manganese efflux pump. Belongs to the MntP (TC 9.B.29) family.
  
     0.640
yabQ
Essential protein for formation of the spore cortex YabQ.
  
     0.635
spoIVB
Serine peptidase SpoIVB.
  
     0.629
ymxH
Hypothetical protein.
 
     0.628
ylmC
ylmCDEF operon involved in sythesis of Fe-citrate transport system-RamB.
 
     0.627
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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