Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
msmEMultiple sugar-binding protein MsmE. (417 aa)    
Predicted Functional Partners:
amyC
Maltose transport protein AmyC.
 
 0.996
amyD
Sugar transporter AmyD.
 
 0.993
msmX
Multiple sugar-binding transport ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.988
msmR
Transcriptional regulator MsmR.
 
    0.847
araQ
Integral membrane protein.
 
 
 0.802
lplC
Transmembrane lipoprotein.
 
 
 0.794
yesQ
Probable transporter permease protein YesQ.
 
 
 0.792
ytcP
Putative multiple sugar transport system permease protein YtcP.
 
 
 0.791
BL02682
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.782
melA
alpha-D-galactoside galactohydrolase, Glycoside Hydrolase Family 4,MelA.
 
    0.778
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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