STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BL01373Lambda integrase-like protein(phage related); Belongs to the 'phage' integrase family. (379 aa)    
Predicted Functional Partners:
yqaB
Phage related protein.
 
    0.734
comFC
Competence protein.
   
    0.535
tyrA
Prephenate dehydrogenase.
  
    0.469
BL05122
Hypothetical protein.
       0.455
yoqW
YoqW; Belongs to the SOS response-associated peptidase family.
   
    0.454
yvcL
Conserved protein YvcL; Involved in cell division and chromosome segregation.
   
    0.454
BL05123
Hypothetical protein.
       0.447
rpsU
Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.408
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.