STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yqeZIntermembrane protease YqeZ. (439 aa)    
Predicted Functional Partners:
yqfA
Conserved hypothetical protein YqfA.
 
  
 0.997
yqfB
Conserved hypothetical protein YqfB.
  
  
 0.944
yqfC
Conserved hypothetical protein YqfC.
       0.657
phoH
Phosphate starvation-induced protein.
     
 0.649
BL05271
Hypothetical protein.
       0.648
yqfD
Putative stage IV sporulation YqfD.
       0.642
rpsU
Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
       0.638
sigW
RNA polymerase ECF(extracytoplasmic function)-type sigma factor (sigma-W); Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.570
ybeY
Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
       0.551
dgkA
Diacylglycerol kinase.
       0.551
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.