STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yqeZIntermembrane protease YqeZ. (439 aa)    
Predicted Functional Partners:
yqfA
Conserved hypothetical protein YqfA.
 
  
 0.992
yqfB
Conserved hypothetical protein YqfB.
  
    0.850
yqfC
Conserved hypothetical protein YqfC.
       0.562
BL05271
Hypothetical protein.
       0.550
yqfD
Putative stage IV sporulation YqfD.
       0.541
phoH
Phosphate starvation-induced protein.
       0.541
rpsU
Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
       0.537
sppA
Signal peptide peptidase.
 
  
 0.493
yvlD
Conserved membrane protein YvlD.
   
  
 0.481
sigW
RNA polymerase ECF(extracytoplasmic function)-type sigma factor (sigma-W); Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.476
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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