STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yodSCoenzyme A transferase. (230 aa)    
Predicted Functional Partners:
yodR
Coenzyme A transferase.
 0.999
yodT
Aminotransferase class-III protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.896
yusL
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase YusL.
  
 
 0.885
yodQ
Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase.
  
  
 0.857
BL00199
Alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.852
yodP
GCN5-related N-acetyltransferase.
  
  
 0.828
mmgA
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.798
yngG
Putative hydroxymethylglutaryl-CoA lyase.
 
 
 0.777
yusK
Putative acetyl-CoA C-acyltransferase YusK; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.772
kamA
Lysine 2,3-aminomutase.
 
  
 0.764
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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