STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yodPGCN5-related N-acetyltransferase. (277 aa)    
Predicted Functional Partners:
kamA
Lysine 2,3-aminomutase.
  
 0.987
yodQ
Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase.
 
  
 0.981
yodR
Coenzyme A transferase.
  
  
 0.977
yodT
Aminotransferase class-III protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.966
yodS
Coenzyme A transferase.
  
  
 0.965
BL01431
Hypothetical protein.
     
 0.870
yozE
Hypothetical protein; Belongs to the UPF0346 family.
     
 0.627
mmgC
acyl-CoA dehydrogenase.
   
    0.602
ysxE
Conserved protein YsxE.
  
    0.494
gltA
Glutamate synthase (large subunit).
     
 0.476
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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