STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
kamALysine 2,3-aminomutase. (469 aa)    
Predicted Functional Partners:
yodP
GCN5-related N-acetyltransferase.
  
 0.987
yodS
Coenzyme A transferase.
 
  
 0.912
BL01431
Hypothetical protein.
  
  
 0.894
yodQ
Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase.
 
  
 0.883
yodR
Coenzyme A transferase.
 
  
 0.862
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
     
 0.852
yodT
Aminotransferase class-III protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 0.849
cheR
Methyl-accepting chemotaxis proteins (MCPs) methyltransferase.
    
   0.816
yozE
Hypothetical protein; Belongs to the UPF0346 family.
       0.674
hom
Homoserine dehydrogenase.
      
 0.621
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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