STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yozEHypothetical protein; Belongs to the UPF0346 family. (73 aa)    
Predicted Functional Partners:
ypmR
Conserved protein YpmR.
 
  
 0.706
BL01431
Hypothetical protein.
     
 0.649
yrzB
Conserved protein YrzB; Belongs to the UPF0473 family.
  
     0.629
ykyB
Hypothetical protein.
  
     0.629
ecsB
ABC transporter (membrane protein).
  
     0.625
ypiA
TPR-repeat containing conserved hypothetical protein.
 
     0.610
ypmS
Conserved protein YpmS.
 
   
 0.603
kamA
Lysine 2,3-aminomutase.
       0.584
ribT
Reductase.
  
     0.561
ycsK
Lipolytic enzyme, G-D-S-L; Lipase involved in spore germination; Belongs to the 'GDSL' lipolytic enzyme family.
 
  
 0.560
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.