Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BL03882 | acoC | BL03882 | BL03014 | Hypothetical protein. | Acetoin dehydrogenase E2 component (dihydrolipoamide acetyltransferase). | 0.758 |
BL03882 | bkdB | BL03882 | BL01506 | Hypothetical protein. | Branched-chain alpha-keto acid dehydrogenase E2 subunit (lipoamide acyltransferase). | 0.758 |
BL03882 | odhA | BL03882 | BL01452 | Hypothetical protein. | 2-oxoglutarate dehydrogenase (E1 subunit); E1 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the decarboxylation of 2-oxoglutarate, the first step in the conversion of 2-oxoglutarate to succinyl-CoA and CO(2). | 0.958 |
BL03882 | odhB | BL03882 | BL01453 | Hypothetical protein. | 2-oxoglutarate dehydrogenase complex (dihydrolipoamide transsuccinylase, E2 subunit); E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). | 0.758 |
BL03882 | pdhC | BL03882 | BL01618 | Hypothetical protein. | Pyruvate dehydrogenase (dihydrolipoamide acetyltransferase E2 subunit). | 0.758 |
acoC | BL03882 | BL03014 | BL03882 | Acetoin dehydrogenase E2 component (dihydrolipoamide acetyltransferase). | Hypothetical protein. | 0.758 |
acoC | acoL | BL03014 | BL03015 | Acetoin dehydrogenase E2 component (dihydrolipoamide acetyltransferase). | Acetoin dehydrogenase E3 component (dihydrolipoamide dehydrogenase). | 0.998 |
acoC | bfmBC | BL03014 | BL01503 | Acetoin dehydrogenase E2 component (dihydrolipoamide acetyltransferase). | Branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase). | 0.987 |
acoC | icd | BL03014 | BL00398 | Acetoin dehydrogenase E2 component (dihydrolipoamide acetyltransferase). | Isocitrate dehydrogenase. | 0.532 |
acoC | odhA | BL03014 | BL01452 | Acetoin dehydrogenase E2 component (dihydrolipoamide acetyltransferase). | 2-oxoglutarate dehydrogenase (E1 subunit); E1 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the decarboxylation of 2-oxoglutarate, the first step in the conversion of 2-oxoglutarate to succinyl-CoA and CO(2). | 0.984 |
acoC | pdhC | BL03014 | BL01618 | Acetoin dehydrogenase E2 component (dihydrolipoamide acetyltransferase). | Pyruvate dehydrogenase (dihydrolipoamide acetyltransferase E2 subunit). | 0.623 |
acoC | pdhD | BL03014 | BL01619 | Acetoin dehydrogenase E2 component (dihydrolipoamide acetyltransferase). | Dihydrolipoamide dehydrogenase E3 subunit of both pyruvate dehydrogenase and 2-oxoglutarate dehydrogenase complexes. | 0.989 |
acoC | sucC | BL03014 | BL01285 | Acetoin dehydrogenase E2 component (dihydrolipoamide acetyltransferase). | succinyl-CoA synthetase (beta subunit); Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.914 |
acoL | acoC | BL03015 | BL03014 | Acetoin dehydrogenase E3 component (dihydrolipoamide dehydrogenase). | Acetoin dehydrogenase E2 component (dihydrolipoamide acetyltransferase). | 0.998 |
acoL | bfmBC | BL03015 | BL01503 | Acetoin dehydrogenase E3 component (dihydrolipoamide dehydrogenase). | Branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase). | 0.599 |
acoL | bkdB | BL03015 | BL01506 | Acetoin dehydrogenase E3 component (dihydrolipoamide dehydrogenase). | Branched-chain alpha-keto acid dehydrogenase E2 subunit (lipoamide acyltransferase). | 0.985 |
acoL | odhA | BL03015 | BL01452 | Acetoin dehydrogenase E3 component (dihydrolipoamide dehydrogenase). | 2-oxoglutarate dehydrogenase (E1 subunit); E1 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the decarboxylation of 2-oxoglutarate, the first step in the conversion of 2-oxoglutarate to succinyl-CoA and CO(2). | 0.961 |
acoL | odhB | BL03015 | BL01453 | Acetoin dehydrogenase E3 component (dihydrolipoamide dehydrogenase). | 2-oxoglutarate dehydrogenase complex (dihydrolipoamide transsuccinylase, E2 subunit); E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). | 0.984 |
acoL | pdhC | BL03015 | BL01618 | Acetoin dehydrogenase E3 component (dihydrolipoamide dehydrogenase). | Pyruvate dehydrogenase (dihydrolipoamide acetyltransferase E2 subunit). | 0.983 |
acoL | pdhD | BL03015 | BL01619 | Acetoin dehydrogenase E3 component (dihydrolipoamide dehydrogenase). | Dihydrolipoamide dehydrogenase E3 subunit of both pyruvate dehydrogenase and 2-oxoglutarate dehydrogenase complexes. | 0.794 |
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