STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yodHSAM dependent methyltransferase. (236 aa)    
Predicted Functional Partners:
yodI
Hypothetical protein.
 
    0.882
yrhH
Putative SAM dependent methyltransferase YrrH.
 
   
 0.853
yrrM
SAM-dependent methyltransferase YrrM.
 
   
 0.740
ctpA
Carboxy-terminal processing protease; Belongs to the peptidase S41A family.
       0.551
lchAA
Lichenysin synthetase A.
 
   
 0.488
comQ
Transcriptional regulator; Belongs to the FPP/GGPP synthase family.
 
   0.457
dhbF
DhbF.
     
 0.406
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.