STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scdAPutative ScdA; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family. (237 aa)    
Predicted Functional Partners:
hmp
Flavohemoglobin; Belongs to the globin family.
  
  
 0.985
BL01473
Nitric oxide reductase cytochrome b subunit.
 
  
 0.574
fenH
FenH.
 
     0.573
cccB
Cytochrome c551.
  
  
 0.542
BL01169
Coenzyme PQQ synthesis protein, putative.
 
     0.505
yvfU
CheY-like.
     
 0.480
narH
Nitrate reductase (beta subunit).
 
   
 0.445
narJ
Nitrate reductase (protein J).
 
   
 0.439
yjzC
Conserved hypothetical protein YjzC.
  
     0.439
BL01171
Conserved hypothetical protein.
 
     0.435
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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