STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
scdAPutative ScdA; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family. (237 aa)    
Predicted Functional Partners:
hmp
Flavohemoglobin; Belongs to the globin family.
  
  
 0.980
fenH
FenH.
 
     0.582
BL01473
Nitric oxide reductase cytochrome b subunit.
 
  
 0.520
cccB
Cytochrome c551.
   
  
 0.513
BL01169
Coenzyme PQQ synthesis protein, putative.
 
     0.511
BL01171
Conserved hypothetical protein.
 
     0.446
yjzC
Conserved hypothetical protein YjzC.
  
     0.439
ywiC
Conserved membrane protein, putative carboxy peptidase YwiC.
 
     0.425
narH
Nitrate reductase (beta subunit).
 
   
 0.418
narJ
Nitrate reductase (protein J).
 
   
 0.413
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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