STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yerBConserved protein YerB. (329 aa)    
Predicted Functional Partners:
yerC
Conserved protein YerC; Trp repressor/replication initiator.
 
    0.875
chi
Conserved protein, Glycoside Hydrolase Family 18; Chitnase; Belongs to the glycosyl hydrolase 18 family.
  
 
 0.763
BL00874
Phage related protein.
    
  0.728
BL05129
Phage related protein.
    
  0.728
yerA
Putative Metallo-dependent hydrolase; Similar to adenine deaminase.
       0.711
BL03073
Hypothetical protein.
  
 0.648
bprB
Bacillopeptidase F.
  
 0.640
pcrB
PcrB; Prenyltransferase that catalyzes in vivo the transfer of the heptaprenyl moiety of heptaprenyl pyrophosphate (HepPP; 35 carbon atoms) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P), producing heptaprenylglyceryl phosphate (HepGP). This reaction is an ether-bond- formation step in the biosynthesis of archaea-type G1P-based membrane lipids found in Bacillales.
 
     0.625
BL03524
Glycoside Hydrolase Family 25.
    
 0.622
yukA
Conserved protein YukA.
  
 
   0.604
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.