STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ywoFPolysaccharide Lyase Family 9,YwoF. (468 aa)    
Predicted Functional Partners:
ytkA
Conserved protein YtkA.
   
  
 0.708
rapE
Response regulator aspartate phosphatase.
  
 
   0.658
ycbO
Conserved hypothetical protein YcbO.
  
     0.651
yunG
YunG.
  
     0.647
BL05021
Conserved hypothetical protein.
  
     0.640
BL00578
Putative deaminase.
 
     0.633
sacB
Levansucrase, Glycoside Hydrolase Family 68; Belongs to the glycosyl hydrolase 68 family.
  
 
   0.612
rapK
Response regulator aspartate phosphatase.
  
     0.595
BL00754
Hypothetical protein.
  
 
   0.551
ydaH
Conserved membrane protein YdaH; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.
  
     0.551
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.