STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yqhQConserved membrane protein YqhQ. (317 aa)    
Predicted Functional Partners:
yqhP
Conserved membrane protein YqhP.
  
    0.826
ywkE
YwkE; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
      0.724
rocF
Arginase; Belongs to the arginase family.
   
    0.560
BL02695
Arginase; BL02695 similar to rocF from Bacillus subtilis; Belongs to the arginase family.
   
    0.560
BL02698
Arginase; Belongs to the arginase family.
   
    0.560
speB
Agmatinase; Belongs to the arginase family.
   
    0.560
yqhR
Conserved membrane protein YqhR.
       0.525
yqhS
3-dehydroquinate dehydratase YqhS; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
 
     0.500
yqhT
Peptidase M24B, X-Pro dipeptidase YqhT.
       0.422
yqkB
Conserved protein YqkB; Belongs to the HesB/IscA family.
  
     0.404
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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