STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
opuACGlycine betaine ABC transporter (glycine betaine-binding protein). (294 aa)    
Predicted Functional Partners:
opuAB
Glycine betaine ABC transporter (permease).
 
 0.999
opuAA
Glycine betaine ABC transporter (ATP-binding protein).
 
 0.999
ohrR
Repressor of ohrA - OhrR.
      
 0.716
opuCC
Glycine betaine/carnitine/choline ABC transporter (osmoprotectant-binding protein).
   
 
 0.647
trxA
Thioredoxin; Belongs to the thioredoxin family.
      
 0.636
desR
Two-component response regulator responsible for cold induction of the des gene.
      
 0.626
opuD
Glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family.
     
 0.611
perR
Transcriptional regulator (Fur family); Belongs to the Fur family.
     
 0.545
yvfL
Binding-protein-dependent transport systems inner membrane component.
     
  0.540
cycB
Putative extracellular solute-binding protein, family 1 CycB.
     
  0.540
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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