STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
opuABGlycine betaine ABC transporter (permease). (284 aa)    
Predicted Functional Partners:
opuAC
Glycine betaine ABC transporter (glycine betaine-binding protein).
 
 0.999
opuAA
Glycine betaine ABC transporter (ATP-binding protein).
 
 0.999
opuCC
Glycine betaine/carnitine/choline ABC transporter (osmoprotectant-binding protein).
 
 
 0.790
opuD
Glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family.
  
   
 0.578
mdxF
Maltodextrin transport system permease protein MdxF.
     
 0.558
msmX
Multiple sugar-binding transport ATP-binding protein; Belongs to the ABC transporter superfamily.
     
 0.548
yvfL
Binding-protein-dependent transport systems inner membrane component.
     
  0.540
cycB
Putative extracellular solute-binding protein, family 1 CycB.
     
  0.540
mdxE
MdxE is substrate binding part of the maltodextrin ABC transport system.
     
  0.540
ybaE
ABC transport system ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
     
  0.540
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.