STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sipWType I signal peptidase. (194 aa)    
Predicted Functional Partners:
yqxM
Secreted biofilm formation protein YqxM.
  
  
 0.996
tasA
Translocation-dependent antimicrobial spore component.
 
  
 0.988
sinR
Transcriptional regulator.
 
  
 0.943
yveK
Putative capsular polysaccharide biosynthesis protein YveK.
   
  
 0.938
slr
Transcriptional regulator Slr.
 
  
 0.857
yveO
Putative exopolysaccharide biosynthesis protein, Glycosyl Transferase Family 2,YveO.
   
 
 0.741
yuaB
Conserved hypothetical protein yuaB.
      
 0.724
yveR
Polysaccharide biosynthesis protein, Glycosyl transferase Family 2,YveR.
   
 
 0.723
lspA
Signal peptidase II LspA; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
      
 0.704
spo0A
Two-component response regulator; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.
      
 0.694
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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