STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yqgUConserved protein YqgU. (366 aa)    
Predicted Functional Partners:
yqgV
Conserved protein YqgV.
  
    0.839
BL02230
Peptidoglycan-binding protein.
  
     0.729
yhjD
Conserved hypothetical protein YhjD.
  
     0.723
ywqB
YwqB.
  
     0.714
yneE
Conserved hypothetical protein YneE.
  
     0.713
yqgB
Conserved membrane protein YqgB.
  
     0.707
yknW
Conserved hypothetical protein.
  
     0.702
yolD
Putative phage related protein.
  
     0.683
yhaN
Conserved hypothetical protein YhaN.
  
     0.683
ykvS
Hypothetical protein.
  
     0.675
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.