STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yknWConserved hypothetical protein. (226 aa)    
Predicted Functional Partners:
yknX
Putative secretion protein, protein transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
    0.964
yknZ
Putative ABC transporter permease.
 
    0.949
yknY
ABC transporter.
 
    0.940
yqgU
Conserved protein YqgU.
  
     0.702
yneE
Conserved hypothetical protein YneE.
  
     0.618
yqzC
Conserved protein YqzC.
  
     0.566
ywmB
Conserved protein YwmB.
  
     0.555
yqaQ
Bipartite response regulator, C-terminal effector.
  
     0.549
ysxE
Conserved protein YsxE.
  
     0.546
xpaC
XpaC.
  
    0.543
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.