STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yknYABC transporter. (230 aa)    
Predicted Functional Partners:
yknZ
Putative ABC transporter permease.
 0.999
yknX
Putative secretion protein, protein transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.968
yknW
Conserved hypothetical protein.
 
    0.888
ytrF
Possible acetoin transport system substrate binding protein YtrF.
  0.861
bceB
Bacitracine efflux ABC transport system permease.
  
  0.729
yclI
Hypothetical membrane protein YclI.
  
  0.729
BL00256
ABC transport system permease protein.
  
  0.676
yxdM
GTP-binding signal recognition particle (SRP54) G-domain.
  
  0.676
yknV
ABC transporter.
     
0.672
ydcC
Conserved membrane protein YdcC.
   
 
 0.632
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.