STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
kdgDProbable 5-dehydro-4-deoxyglucarate dehydratase KdgD; Belongs to the DapA family. (308 aa)    
Predicted Functional Partners:
gudD
Mandelate racemase/muconate lactonizing enzyme; Glucarate dehydratase.
 
  
 0.994
garD
Galactarate dehydratase.
 
  
 0.984
ybcD
Aldehyde dehydrogenase YbcD; Belongs to the aldehyde dehydrogenase family.
  
 
  0.924
yitF
YitF; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
    
  0.900
ycbG
Putative regulatory protein YcbG.
 
   
 0.858
gudP
D-galactonate transporter.
 
    0.684
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.
 
  
 0.602
aroA
3-deoxy-D-arabino-heptulosonate 7-phosphate synthase and chorismate mutase-isozyme 3.
  
  
 0.594
gatC
glutamyl-tRNA(Gln) amidotransferase (subunit C); Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
  
    0.542
dapG
Aspartokinase I (alpha and beta subunits); Belongs to the aspartokinase family.
 
  
 0.486
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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