STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gudDMandelate racemase/muconate lactonizing enzyme; Glucarate dehydratase. (455 aa)    
Predicted Functional Partners:
kdgD
Probable 5-dehydro-4-deoxyglucarate dehydratase KdgD; Belongs to the DapA family.
 
  
  0.959
garD
Galactarate dehydratase.
 
  
 0.930
gudP
D-galactonate transporter.
 
    0.892
ycbG
Putative regulatory protein YcbG.
 
     0.677
uxaA
Altronate hydrolase.
 
  
 0.668
ybcD
Aldehyde dehydrogenase YbcD; Belongs to the aldehyde dehydrogenase family.
  
 
  0.664
yitF
YitF; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
  0.630
dgoA
Putative dehydratase.
 
  
  0.597
dgoT
Putative transporter.
 
    0.511
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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