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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycbGPutative regulatory protein YcbG. (237 aa)    
Predicted Functional Partners:
ydhC
Putative regulatory protein.
  
  
 0.760
garD
Galactarate dehydratase.
 
   
 0.746
BL00689
Probable transcriptional regulator.
  
  
 0.715
BL05370
Putative transcriptional regulator.
  
  
 0.704
gudD
Mandelate racemase/muconate lactonizing enzyme; Glucarate dehydratase.
 
     0.677
kdgD
Probable 5-dehydro-4-deoxyglucarate dehydratase KdgD; Belongs to the DapA family.
 
   
 0.622
BL03848
Transcriptional regulator (IclR family).
  
  
 0.588
BL03804
Hypothetical DNA-binding protein,putative transcriptional regulator.
  
  
 0.543
gudP
D-galactonate transporter.
 
     0.540
BL03958
Transcriptional regulator (IclR family).
  
  
 0.530
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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