STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
spaFABC transporter SpaF. (238 aa)    
Predicted Functional Partners:
spaE
SpaE.
 
  
 0.951
spaG
SpaG; Also annotated as lantibiotic permease.
 
  
 0.949
spaK
Two-component sensor histidine kinase SpaK; Similar to Subtilin biosynthesis sensor protein spaK in Bacillus subtilis.
 
     0.866
spaR
SpaR; Regulatory protein.
 
     0.802
yccF
Conserved hypothetical protein.
       0.497
BL01807
Putative permease.
  
   0.477
BL05021
Conserved hypothetical protein.
 
   0.445
fhuC
Ferrichrome ABC transporter (ATP-binding protein).
 
 
   
0.432
bceA
ABC transporter,ATP/GTP-binding site motif A (P-loop).
 
    
0.422
yfiC
ABC transporter.
  
 
  0.414
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.