STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybgATranscriptional regulator. (242 aa)    
Predicted Functional Partners:
BL01684
Conserved hypothetical protein; Probably catalyzes the deacetylation of acetylated carbohydrates an important step in the degradation of oligosaccharides.
       0.773
BL03053
Probable transcriptional regulator (AraC/XylS family).
  
  
 0.646
ywbA
PTS lactose/cellobiose IIC component,PTS system cellobiose-specific IIC component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
 
    0.612
nagA
N-acetylglucosamine-6-phosphate deacetylase (Carbohydrate esterase Family 9).
  
  
 0.604
gntR
Transcriptional regulator.
  
   
 0.600
ypqE
Putative PTS system IIA component.
    
 0.596
ptsG
Phosphotransferase system (PTS) glucose-specific enzyme IICBA component.
  
 
 0.555
BL01803
Glycoside Hydrolase Family 4.
       0.543
BL01801
Phosphotransferase system (PTS) lichenan-specific enzyme IIA component; BL01801 similar to licA from Bacillus subtilis.
       0.525
BL01800
Phosphotransferase system, lactose/cellobiose-specific IIB subunit.
       0.509
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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