STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ybgATranscriptional regulator. (242 aa)    
Predicted Functional Partners:
BL01684
Conserved hypothetical protein; Probably catalyzes the deacetylation of acetylated carbohydrates an important step in the degradation of oligosaccharides.
       0.773
BL03053
Probable transcriptional regulator (AraC/XylS family).
  
  
 0.651
nagA
N-acetylglucosamine-6-phosphate deacetylase (Carbohydrate esterase Family 9).
  
  
 0.626
ywbA
PTS lactose/cellobiose IIC component,PTS system cellobiose-specific IIC component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
 
    0.617
ypqE
Putative PTS system IIA component.
     
 0.569
gntR
Transcriptional regulator.
  
   
 0.566
BL01803
Glycoside Hydrolase Family 4.
       0.550
BL01801
Phosphotransferase system (PTS) lichenan-specific enzyme IIA component; BL01801 similar to licA from Bacillus subtilis.
       0.531
yvfI
Probable transcriptional regulator YvfI.
  
    0.530
BL01800
Phosphotransferase system, lactose/cellobiose-specific IIB subunit.
       0.515
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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