STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
chiAChitinase precursor, Glycoside Hydrolase Family 18. (693 aa)    
Predicted Functional Partners:
chi
Conserved protein, Glycoside Hydrolase Family 18; Chitnase; Belongs to the glycosyl hydrolase 18 family.
 
 
0.990
ybbD
Glycoside hydrolase, family 3; Probable beta-hexosaminidase; Belongs to the glycosyl hydrolase 3 family.
     
 0.902
chbB
Putative chitin binding protein; Paha thinks this maybe a GH61.
 
   
 0.757
amyL
Alpha amylase, Glycoside Hydrolase Family 13; BL00499 similar to treA from Bacillus subtilis.
      
 0.499
BL00055
Hypothetical protein.
    
 
 0.431
smc
Chromosome segregation SMC protein homolg; Required for chromosome condensation and partitioning. Belongs to the SMC family.
    
 
 0.431
bglC
Endo-1,4-beta-glucanase, Glycoside hydrolase Family 5.
  
     0.426
dhbA
2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.422
ctaC
Cytochrome caa3 oxidase (subunit II); Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 
 0.418
celA
Glycoside Hydrolase Family 9.
  
     0.401
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.