STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycbPHypothetical protein. (126 aa)    
Predicted Functional Partners:
cotF
Spore coat protein F.
  
     0.728
yraD
YraD.
  
     0.704
ybgF
Amino acid permease YbgF.
       0.693
ybgG
Homocysteine S-methyltransferase YbgG.
       0.693
yraE
YraE.
  
     0.677
yuaC
Hypothetical protein; Belongs to the GbsR family.
  
     0.617
sspH
Small acid-soluble spore protein; Belongs to the SspH family.
  
     0.551
cotX
Spore coat protein (insoluble fraction).
  
     0.535
yvbF
Conserved protein YvbF; Belongs to the GbsR family.
  
     0.520
ydaT
Conserved protein YdaT.
  
    0.499
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.