STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
blaRIPenicillin-binding protein, transpeptidase domain,Peptidase M56, BlaR1. (599 aa)    
Predicted Functional Partners:
blaI
Putative beta-lactamase repressor protein.
 
 
 0.998
blaP
Beta-lactamase precursor.
 
   
 0.724
topB
DNA topoisomerase III; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA su [...]
 
   
 0.575
BL02684
Putative Extracellular solute-binding protein.
  
 
  0.558
msmE
Multiple sugar-binding protein MsmE.
  
 
  0.533
ynaD
GCN5-related N-acetyltransferase; Acetyltransferase (GNAT) family.
       0.533
yesO
Putative transport system substrate-binding protein YesO.
  
 
  0.528
ytcQ
Putative multiple sugar transport system substrate-binding protein YtcQ.
   
 
  0.462
araN
Sugar-binding protein.
   
 
  0.462
BL01933
Putative extracellular solute-binding protein.
   
 
  0.462
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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