STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycgAC4-dicarboxylate anaerobic carrier. (466 aa)    
Predicted Functional Partners:
hipO
Peptidase M20D, amidohydrolase; Belongs to the peptidase M20A family.
 
    0.660
yfhF
Conserved hypothetical protein, YfcH; NAD dependent epimerase/dehydratase family.
      
 0.599
yfiL
ABC transporter YfiL.
      
 0.562
radC
DNA repair protein; Belongs to the UPF0758 family.
      
 0.543
ywpH
Single-strand binding protein.
      
 0.541
arcA
Arginine deiminase.
 
   
 0.521
ylaK
Nucleotide binding protein.
      
 0.487
mleN
malate-H+/Na+-lactate antiporter.
 
     0.462
nhaC
Na+/H+ antiporter.
 
     0.462
smf
DNA processing Smf protein homolog.
      
 0.455
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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