STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ysfD4Fe-4S ferredoxin, iron-sulfur binding domain; glcF in Bacillus thuringiensis. (440 aa)    
Predicted Functional Partners:
ysfC
Glycolate oxidase subunit GlcD.
 
 0.999
BL02644
Malate synthase A; Belongs to the malate synthase family.
  
 
 0.934
yvfW
Iron-sulfur cluster binding protein YvfW; Is involved in L-lactate degradation and allows cells to grow with lactate as the sole carbon source. Has probably a role as an electron transporter during oxidation of L-lactate.
 
 
 0.926
BL02646
Isocitrate lyase.
     
 0.906
BL02138
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain,D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain.
    
  0.902
yvcT
Probable 2-ketogluconate reductase YvcT; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
  0.902
kdgA
2-keto-3-deoxygluconate-6-phosphate aldolase.
     
  0.900
BL03850
2-keto-3-deoxygluconate-6-phosphate aldolase.
     
  0.900
yvbY
YvbY; Is involved in L-lactate degradation and allows cells to grow with lactate as the sole carbon source.
 
 
 0.887
BL02365
Putative sugar diacid recognition protein.
     
 0.588
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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