STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ysfD4Fe-4S ferredoxin, iron-sulfur binding domain; glcF in Bacillus thuringiensis. (440 aa)    
Predicted Functional Partners:
ysfC
Glycolate oxidase subunit GlcD.
 
 0.996
yvfW
Iron-sulfur cluster binding protein YvfW; Is involved in L-lactate degradation and allows cells to grow with lactate as the sole carbon source. Has probably a role as an electron transporter during oxidation of L-lactate.
 
 0.944
yvbY
YvbY; Is involved in L-lactate degradation and allows cells to grow with lactate as the sole carbon source.
 
 
 0.924
BL00199
Alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.801
gltA
Glutamate synthase (large subunit).
    
 0.799
yrkF
YrkF; Belongs to the sulfur carrier protein TusA family.
   
 0.787
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 0.776
glpD
Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
  
 
 0.713
BL02644
Malate synthase A; Belongs to the malate synthase family.
  
 
 0.657
dgkA
Diacylglycerol kinase.
  
  
  0.598
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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