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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ysfCGlycolate oxidase subunit GlcD. (470 aa)    
Predicted Functional Partners:
ysfD
4Fe-4S ferredoxin, iron-sulfur binding domain; glcF in Bacillus thuringiensis.
 
 0.996
fni
FMN/related compound-binding protein; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
  
 0.915
gltA
Glutamate synthase (large subunit).
    
 0.867
etfB
Electron transfer flavoprotein (beta subunit).
 
 
 0.856
etfA
Electron transfer flavoprotein (alpha subunit).
 
 
 0.853
cccB
Cytochrome c551.
   
 0.847
cccA
Cytochrome c550.
   
 0.847
BL02644
Malate synthase A; Belongs to the malate synthase family.
  
 
 0.844
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 0.807
yrkH
Conserved protein YrkH.
    
 0.794
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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