STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ysfCGlycolate oxidase subunit GlcD. (470 aa)    
Predicted Functional Partners:
ysfD
4Fe-4S ferredoxin, iron-sulfur binding domain; glcF in Bacillus thuringiensis.
 
 0.999
BL02138
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain,D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain.
 
 
 0.938
BL02644
Malate synthase A; Belongs to the malate synthase family.
  
 
 0.936
yvcT
Probable 2-ketogluconate reductase YvcT; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
 
 0.936
kdgA
2-keto-3-deoxygluconate-6-phosphate aldolase.
   
 
 0.911
BL03850
2-keto-3-deoxygluconate-6-phosphate aldolase.
   
 
 0.911
BL02646
Isocitrate lyase.
     
 0.907
etfB
Electron transfer flavoprotein (beta subunit).
 
 
 0.873
etfA
Electron transfer flavoprotein (alpha subunit).
 
 
 0.863
gltA
Glutamate synthase (large subunit).
     
 0.745
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.