STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yckIABC transporter YckI. (247 aa)    
Predicted Functional Partners:
yckJ
ABC transporter permease protein YckJ; 3-TM region, His/Glu/Gln/Arg/opine,Binding-protein-dependent transport systems inner membrane component.
 0.999
yckK
Putative extracellular solute-binding protein, family 3 YckK; Belongs to the bacterial solute-binding protein 3 family.
 
 0.998
artQ
High affinity arginine transport system permease protein.
 0.989
yckA
Amino acid ABC transporter, permease protein YckA.
 0.988
yckB
Putative extracellular solute-binding protein YckB; Belongs to the bacterial solute-binding protein 3 family.
 
 0.936
yknZ
Putative ABC transporter permease.
 
      0.730
gltA
Glutamate synthase (large subunit).
  
  
 0.673
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
  
 0.533
rocR
Transcriptional activator of arginine utilization operons (NtrC family).
       0.478
yfiC
ABC transporter.
 
     
0.450
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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