STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rocRTranscriptional activator of arginine utilization operons (NtrC family). (470 aa)    
Predicted Functional Partners:
sigL
RNA polymerase sigma-54 factor (sigma-L).
 
  
 0.888
BL03174
Two-component sensor histidine kinase.
  
  
 0.841
cheV
CheV.
  
 
 0.776
yhcY
ATP-binding region protein.
     
 0.741
yclK
Two-component sensor histidine kinase YclK.
    
  0.736
rocD
Ornithine aminotransferase; Catalyzes the interconversion of ornithine to glutamate semialdehyde.
     
 0.694
rocG
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
     
 0.580
rocF
Arginase; Belongs to the arginase family.
     
 0.580
yckK
Putative extracellular solute-binding protein, family 3 YckK; Belongs to the bacterial solute-binding protein 3 family.
       0.498
yckJ
ABC transporter permease protein YckJ; 3-TM region, His/Glu/Gln/Arg/opine,Binding-protein-dependent transport systems inner membrane component.
       0.496
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.