STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybfAPutative DNA binding protein YbfA. (305 aa)    
Predicted Functional Partners:
ybfB
Major facilitator superfamily protein YbfB.
 
  
 0.891
hisI
phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphohydrolase; In the N-terminal section; belongs to the PRA-CH family.
  
 
  0.745
bglP
Phosphotransferase system (PTS) beta-glucoside-specific enzyme IIBCA component.
   
 
 0.738
BL01947
Phosphotransferase system (PTS) beta-glucoside-specific enzyme IIBCA component.
   
 
 0.738
BL02334
Phosphotransferase system (PTS) beta-glucoside-specific enzyme IIBCA component.
   
 
 0.738
ptsG
Phosphotransferase system (PTS) glucose-specific enzyme IICBA component.
   
 
 0.738
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
 
 0.576
yqkA
Probable acetyltransferase YqkA.
    
 0.568
ykcA
Glyoxalase/Bleomycin resistance protein/dioxygenase domain superfamily protein.
  
 
 0.528
ydfG
Conserved hypothetical protein containing Alkylhydroperoxidase AhpD core domain YdfG; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
     0.518
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.