STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yclHABC transporter YclH. (227 aa)    
Predicted Functional Partners:
yclI
Hypothetical membrane protein YclI.
 
 
 0.986
yknZ
Putative ABC transporter permease.
   0.956
yclK-2
Histidine kinase, homodimeric YclK.
 
 
 
 0.890
yxdM
GTP-binding signal recognition particle (SRP54) G-domain.
  
 
 0.863
yclJ-2
Hypothetical sensory transduction protein YclJ.
     
 0.788
ytrF
Possible acetoin transport system substrate binding protein YtrF.
 
   0.767
BL00805
ABC transporter,ATP/GTP-binding site motif A (P-loop).
  
     0.705
lanF
Lantibiotic immunity protein,ABC transporter.
  
     0.697
BL03201
ABC transporter.
  
     0.619
bceB
Bacitracine efflux ABC transport system permease.
  
   0.614
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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