STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ycnJPutative copper export protein YcnJ. (545 aa)    
Predicted Functional Partners:
ycnI
Conserved membrane protein.
 
  
 0.999
ycnK
Probable transcriptional regulator (DeoR family).
  
  
 0.990
copZ
Copper binding protein CopZ.
     
 0.803
BL02059
Putative oxidoreductase.
    
   0.775
cotA
Spore coat protein (outer).
     
 0.771
yvgZ
Conserved hypothetical protein YvgZ.
     
 0.746
cueR
Transcriptional activator of copZA operon (MerR family).
      
 0.739
BL05332
Hypothetical protein.
     
 0.719
yvgW
Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase,Heavy metal translocating P-type ATPase.
     
 0.545
nasB
Assimilatory nitrate reductase (electron transfer subunit); Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
     0.502
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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