STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yngDConserved protein YngD. (400 aa)    
Predicted Functional Partners:
yqgW
Conserved protein YqgW.
  
     0.734
yueB
Eukaryotic DNA topoisomerases I, dispensable insert.
  
     0.670
yukE
Conserved protein YukE; Belongs to the WXG100 family.
  
     0.639
BL02739
Hypothetical protein.
  
     0.639
yukC
Conserved protein YukC.
  
     0.636
csbA
Putative membrane protein.
  
     0.635
yukA
Conserved protein YukA.
  
     0.616
BL01910
Transposase protein.
  
     0.587
BL01584
Putative transposase.
  
     0.568
BL03289
Peptidase S9, serine active site.
  
     0.555
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.