STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fruPPutative sugar permease YwbF. (411 aa)    
Predicted Functional Partners:
fruA-2
Glycoside Hydrolase Family 32; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
 
  
 0.824
narG
Nitrate reductase (alpha subunit); Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.750
narH
Nitrate reductase (beta subunit).
  
 
 0.700
yurN
Binding-protein-dependent transport systems inner membrane component.
  
    0.677
BL01931
Binding-protein-dependent transport systems inner membrane component.
  
    0.666
BL01933
Putative extracellular solute-binding protein.
  
    0.662
glcP
glucose/mannose:H+ symporter.
     
 0.615
narJ
Nitrate reductase (protein J).
  
  
 0.599
BL02427
Putative phosphoesterase.
  
     0.598
ywjF
4Fe-4S ferredoxin protein.
  
 
 0.552
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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