STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yoeBConserved hypothetical protein YoeB. (182 aa)    
Predicted Functional Partners:
cwlO
Putative peptidoglycan hydrolase, DL-endopeptidase II family; Shows a cell wall hydrolytic DL-endopeptidase activity. Belongs to the peptidase C40 family.
    
 
 0.962
lytE
Cell wall hydrolase phosphatase-associated protein.
    
 
 0.956
cwlS
gamma-D-glutamate-meso-diaminopimelate muropeptidase (major autolysin) (CWBP49').
    
 
 0.842
yjeA
Putative Carbohydrate Esterase Family 4 protein; Similar to endo-1,4-beta-xylanase.
      
 0.700
ccdA
Integral membrane protein cytochrome biogenesis protein CcdA.
      
 0.582
parE
Subunit of DNA topoisomerase IV; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 2 subfamily.
      
 0.573
ccdB
Putative two-component response regulator.
      
 0.509
BL01303
Peptidoglycan-binding protein.
    
 
 0.488
pgdS
gamma-DL-glutamyl hydrolase.
    
   0.425
ykfC
Putative hydrolase.
    
   0.425
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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