STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yngIAMP-dependent synthetase and ligase. (545 aa)    
Predicted Functional Partners:
yngG
Putative hydroxymethylglutaryl-CoA lyase.
  
 0.949
yngF
Enoyl-CoA hydratase/isomerase YngF; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.940
yngJ
Acyl-CoA dehydrogenase.
  
  
 0.923
yngH
Carbamoyl-phosphate synthase L chain, ATP binding.
 
  
 0.919
yngE
Carboxyl transferase.
 
 
 0.902
dhbF
DhbF.
  
 
 0.875
lchAA
Lichenysin synthetase A.
  
 
 0.690
BL01989
Pyruvate carboxylase.
     
 0.640
rplC
Ribosomal protein L3 (BL3); One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
   
   0.627
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
    
   0.616
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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