STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjlCConserved hypothetical protein YjlC. (144 aa)    
Predicted Functional Partners:
yjlD
Aminotransferase, class IV YjlD.
  
  
 0.846
BL05198
Hypothetical protein.
       0.773
BL02059
Putative oxidoreductase.
  
    0.604
BL01994
DNA binding domain, excisionase family protein.
       0.490
nasC
Assimilatory nitrate reductase (catalytic subunit); Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
    0.427
yrhE
Formate dehydrogenase, alpha subunit YrhE.
  
    0.427
yjgC
Iron-sulfur binding domain containing protein.
  
    0.427
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.