STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacCPenicillin-binding protein (D-alanyl-D-alanine carboxypeptidase). (489 aa)    
Predicted Functional Partners:
ykfA
Conserved hypothetical protein.
 
  
 0.860
BL00458
Hypothetical protein.
   
   0.739
ybbE
Putative beta-lactamase YbbE.
  
  
 0.633
hxlR
DNA-binding protein, transcriptional regulator HxlR.
      
 0.629
yngH
Carbamoyl-phosphate synthase L chain, ATP binding.
      
 0.627
blaP
Beta-lactamase precursor.
  
  
 0.611
ybbD
Glycoside hydrolase, family 3; Probable beta-hexosaminidase; Belongs to the glycosyl hydrolase 3 family.
  
  
 0.604
dacF
Penicilin binding protein (putative D-alanyl-D-alanine carboxypeptidase); Belongs to the peptidase S11 family.
     
 0.593
dacB
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*); Belongs to the peptidase S11 family.
     
 0.593
dacA
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5); Belongs to the peptidase S11 family.
     
 0.593
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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