STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yfiBABC transporter. (575 aa)    
Predicted Functional Partners:
yfiC
ABC transporter.
 
 
 
0.988
BL02002
Putative transcriptional regulator.
 
     0.851
ftsE
Cell-division ATP-binding protein; Part of the ABC transporter FtsEX involved in cellular division.
 
     
0.688
artM
ABC transporter.
 
     
0.567
BL02003
Hypothetical protein.
   
   0.522
lchAA
Lichenysin synthetase A.
  
 
 0.483
dhbF
DhbF.
  
 
 0.479
BL01999
Cytochrome P450.
  
   0.472
ythA
Cytochrome bd ubiquinol oxidase, subunit I.
      
 0.459
BL02723
ABC transporter,ATP/GTP-binding site motif A (P-loop).
  
 
  0.445
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.