STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gltCTranscriptional regulator; Belongs to the LysR transcriptional regulatory family. (300 aa)    
Predicted Functional Partners:
gltA
Glutamate synthase (large subunit).
  
  
 0.828
gltB
Glutamate synthase (small subunit).
   
 
 0.647
gudB
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
 0.570
glnA
Glutamine synthetase.
      
 0.477
flgM
Anti-sigma factor repressor of sigma-D-dependent transcription.
  
     0.467
appA
Oligopeptide ABC transporter (oligopeptide-binding protein).
      
 0.455
yttB
Major facilitator superfamily YttB.
      
 0.434
ytvB
YtvB.
      
 0.434
glyQ
glycyl-tRNA synthetase (alpha subunit).
      
 0.433
fliZ
Flagellar protein.
  
     0.415
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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