STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yrrDPhotosynthetic reaction centre, H-chain, cytoplasmic. (154 aa)    
Predicted Functional Partners:
BL02035
Hypothetical protein.
 
    0.884
BL05285
Hypothetical protein.
  
    0.789
yheC
Conserved hypothetical protein YheC.
  
     0.746
yheD
Conserved hypothetical protein YheD.
  
     0.743
yrrC
Putative exodeoxyribonuclease V alpha subunit YrrC; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.
       0.690
yrrI
Conserved protein YrrI.
       0.661
ywiC
Conserved membrane protein, putative carboxy peptidase YwiC.
  
     0.651
yrrB
Conserved protein YrrB.
       0.626
BL03704
Conserved hypothetical protein.
   
    0.619
yhcV
ABC transporter YhcV.
   
    0.604
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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