STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yrrDPhotosynthetic reaction centre, H-chain, cytoplasmic. (154 aa)    
Predicted Functional Partners:
BL02035
Hypothetical protein.
 
    0.852
BL05285
Hypothetical protein.
  
    0.769
yheC
Conserved hypothetical protein YheC.
  
     0.746
yheD
Conserved hypothetical protein YheD.
  
     0.743
ywiC
Conserved membrane protein, putative carboxy peptidase YwiC.
  
     0.651
yrrC
Putative exodeoxyribonuclease V alpha subunit YrrC; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.
       0.604
yrrI
Conserved protein YrrI.
       0.567
rapG
Response regulator aspartate phosphatase.
  
     0.555
bofC
BofC.
  
     0.527
BL02573
Hypothetical protein.
  
     0.526
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.