Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| BL02060 | thiF | BL02060 | BL01587 | Metallo-beta-lactamase/rhodanese-like domain protein. | ThiF. | 0.793 |
| BL02060 | thiI | BL02060 | BL00431 | Metallo-beta-lactamase/rhodanese-like domain protein. | Thiamine biosynthesis protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.748 |
| BL02060 | yrkF | BL02060 | BL02052 | Metallo-beta-lactamase/rhodanese-like domain protein. | YrkF; Belongs to the sulfur carrier protein TusA family. | 0.932 |
| BL02060 | yrkH | BL02060 | BL02053 | Metallo-beta-lactamase/rhodanese-like domain protein. | Conserved protein YrkH. | 0.929 |
| BL02060 | yrkI | BL02060 | BL02054 | Metallo-beta-lactamase/rhodanese-like domain protein. | Conserved protein YrkI; Belongs to the sulfur carrier protein TusA family. | 0.958 |
| BL02060 | yrvO | BL02060 | BL02040 | Metallo-beta-lactamase/rhodanese-like domain protein. | Aminotransferase, class V. | 0.807 |
| cymR | trmU | BL02041 | BL02039 | Negative regulator of riboflavin kinase. | tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | 0.556 |
| cymR | yrvO | BL02041 | BL02040 | Negative regulator of riboflavin kinase. | Aminotransferase, class V. | 0.912 |
| nifU | yrvO | BL00691 | BL02040 | Fe-S cluster formation protein. | Aminotransferase, class V. | 0.955 |
| nifU-2 | yrvO | BL02163 | BL02040 | Nitrogen-fixing protein NifU. | Aminotransferase, class V. | 0.950 |
| thiF | BL02060 | BL01587 | BL02060 | ThiF. | Metallo-beta-lactamase/rhodanese-like domain protein. | 0.793 |
| thiF | thiI | BL01587 | BL00431 | ThiF. | Thiamine biosynthesis protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.632 |
| thiF | yrkF | BL01587 | BL02052 | ThiF. | YrkF; Belongs to the sulfur carrier protein TusA family. | 0.850 |
| thiF | yrkH | BL01587 | BL02053 | ThiF. | Conserved protein YrkH. | 0.793 |
| thiF | yrvO | BL01587 | BL02040 | ThiF. | Aminotransferase, class V. | 0.802 |
| thiI | BL02060 | BL00431 | BL02060 | Thiamine biosynthesis protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | Metallo-beta-lactamase/rhodanese-like domain protein. | 0.748 |
| thiI | thiF | BL00431 | BL01587 | Thiamine biosynthesis protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | ThiF. | 0.632 |
| thiI | trmU | BL00431 | BL02039 | Thiamine biosynthesis protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | 0.698 |
| thiI | yrkF | BL00431 | BL02052 | Thiamine biosynthesis protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | YrkF; Belongs to the sulfur carrier protein TusA family. | 0.533 |
| thiI | yrkH | BL00431 | BL02053 | Thiamine biosynthesis protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | Conserved protein YrkH. | 0.748 |
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