STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yrkFYrkF; Belongs to the sulfur carrier protein TusA family. (190 aa)    
Predicted Functional Partners:
yrkE
YrkE.
 
  
 0.984
yrkH
Conserved protein YrkH.
 
 
 0.947
yrkJ
Conserved membrane protein YrkJ.
 
  
 0.913
nifS
NifS.
 
 
 
 0.853
yrvO
Aminotransferase, class V.
 
 
 
 0.852
yrkD
Conserved protein YrkD.
 
   
 0.852
nifZ
NifZ.
   
 
 0.833
yrkI
Conserved protein YrkI; Belongs to the sulfur carrier protein TusA family.
 
  
0.756
gltA
Glutamate synthase (large subunit).
      
 0.725
BL02060
Metallo-beta-lactamase/rhodanese-like domain protein.
 
 
0.720
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.