STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yrkIConserved protein YrkI; Belongs to the sulfur carrier protein TusA family. (75 aa)    
Predicted Functional Partners:
yrkH
Conserved protein YrkH.
 
 
 0.991
BL02060
Metallo-beta-lactamase/rhodanese-like domain protein.
  
 
 0.958
yrkE
YrkE.
 
 
 0.947
nifZ
NifZ.
   
 0.874
nifS
NifS.
   
 0.874
yrvO
Aminotransferase, class V.
   
 0.874
yrkJ
Conserved membrane protein YrkJ.
 
    0.846
yrkF
YrkF; Belongs to the sulfur carrier protein TusA family.
 
 
0.729
BL02059
Putative oxidoreductase.
    
 0.660
BL02056
Cytochrome c heme-binding site.
       0.572
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.