STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yrhFConserved protein YrhF. (123 aa)    
Predicted Functional Partners:
yrhD
Conserved protein YrhD.
 
     0.859
yrhE
Formate dehydrogenase, alpha subunit YrhE.
 
     0.772
yjgD
Hypothetical protein.
 
     0.735
BL02074
Rhodopsin-like GPCR superfamily.
       0.682
yjgC
Iron-sulfur binding domain containing protein.
 
     0.574
BL00917
Conserved hypothetical protein; Belongs to the UPF0753 family.
 
    0.547
fdhD
FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
    0.546
ybcF
Carbonic anhydrase YbcF.
 
    0.473
ybcI
Conserved protein YbcI.
  
     0.467
cotJA
CotJA.
  
     0.467
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.