STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
deoC1Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. (223 aa)    
Predicted Functional Partners:
pdp
Pyrimidine-nucleoside phosphorylase.
 
 
 0.856
drm
Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.
 
 
 0.854
BL00597
Putative phosphopentomutase; BL00597 similar to drm from Bacillus subtilis, phosphodeoxyribomutase.
  
 
 0.816
bglP
Phosphotransferase system (PTS) beta-glucoside-specific enzyme IIBCA component.
    
 0.793
BL01947
Phosphotransferase system (PTS) beta-glucoside-specific enzyme IIBCA component.
    
 0.793
BL02334
Phosphotransferase system (PTS) beta-glucoside-specific enzyme IIBCA component.
    
 0.793
ptsG
Phosphotransferase system (PTS) glucose-specific enzyme IICBA component.
    
 0.793
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 0.770
BL00199
Alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 0.748
nagP
Phosphotransferase system (PTS) N-acetylglucosamine-specific enzyme IICB component.
    
  0.740
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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